		D. melanogaster Genome Browser

D. melanogaster Genomic Browser: 57 kbp from 2L:123,000..180,000

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Overview

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FlyBase Genes

Embryonic (PolyA) (Showing 11 of 11 subtracks)

Chromatin states (9 state model, S2 cells)

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Chromatin Structure

DNA replication

Gene Structure

RNA Expression Profiling

Chrom. Silencers and Re-modellers in CME W1 cl.8+ cells [?]	Chromatin Proteins in ML-DmBG3-c2 cells [?] [showing 7/7 subtracks]	Dosage comp. Proteins in Oregon strain [?]
Chrom. Silencers and Re-modellers in Kc167 cells [?] [showing 4/4 subtracks]	Chromatin Proteins in Oregon strain [?] [showing 9/9 subtracks]	Dosage comp. Proteins in S2-DRSC cells [?] [showing 4/4 subtracks]
Chrom. Silencers and Re-modellers in ML-DmBG3-c2 cells [?]	Chromatin Proteins in S2-DRSC cells [?] [showing 23/23 subtracks]	Polycomb Proteins in Kc167 cells [?] [showing 3/3 subtracks]
Chrom. Silencers and Re-modellers in S2-DRSC cells [?] [showing 3/3 subtracks]	Dosage comp. Proteins in CME W1 cl.8+ cells [?] [showing 2/2 subtracks]	Polycomb Proteins in ML-DmBG3-c2 cells [?] [showing 4/4 subtracks]
Chromatin Proteins in CME W1 cl.8+ cells [?] [showing 6/6 subtracks]	Dosage comp. Proteins in Kc167 cells [?] [showing 2/2 subtracks]	Polycomb Proteins in S2-DRSC cells [?] [showing 5/5 subtracks]
Chromatin Proteins in Kc167 cells [?] [showing 8/8 subtracks]	Dosage comp. Proteins in ML-DmBG3-c2 cells [?] [showing 2/2 subtracks]

Chromatin states (30 state model, BG3 cells) [?]	Chromatin states (9 state model, BG3 cells) [?]
Chromatin states (30 state model, S2 cells) [?]	Chromatin states (9 state model, S2 cells) [?]

H3 Histone modifications in CME W1 cl.8+ cells [?] [showing 8/8 subtracks]	H3 Histone modifications in S2-DRSC cells [?] [showing 20/20 subtracks]	H4 Histone modifications in Oregon strain [?]
H3 Histone modifications in Kc167 cells [?] [showing 15/15 subtracks]	H4 Histone modifications in CME W1 cl.8+ cells [?] [showing 2/2 subtracks]	H4 Histone modifications in S2-DRSC cells [?] [showing 6/6 subtracks]
H3 Histone modifications in ML-DmBG3-c2 cells [?] [showing 17/17 subtracks]	H4 Histone modifications in Kc167 cells [?] [showing 3/3 subtracks]
H3 Histone modifications in Oregon strain [?] [showing 13/13 subtracks]	H4 Histone modifications in ML-DmBG3-c2 cells [?] [showing 2/2 subtracks]

ChIP-Seq: Histone Modifications in Adult Female [?] [showing 4/4 subtracks]	ChIP-Seq: Histone Modifications in embryo 16-20hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in L1 [?] [showing 6/6 subtracks]
ChIP-Seq: Histone Modifications in Adult Male [?] [showing 5/5 subtracks]	ChIP-Seq: Histone Modifications in embryo 20-24hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in L2 [?] [showing 7/7 subtracks]
ChIP-Seq: Histone Modifications in embryo 0-4hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in embryo 4-8hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in L3 [?] [showing 5/5 subtracks]
ChIP-Seq: Histone Modifications in embryo 12-16hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in embryo 8-12hr [?] [showing 6/6 subtracks]	ChIP-Seq: Histone Modifications in Pupae [?] [showing 6/6 subtracks]

ChIP-chip: Histone Modifications in Adult Female [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in embryo 20-24hr [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in L3 [?] [showing 6/6 subtracks]
ChIP-chip: Histone Modifications in Adult Male [?] [showing 9/9 subtracks]	ChIP-chip: Histone Modifications in embryo 4-8hr [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in L3 (H3,Karpen) [?] [showing 13/13 subtracks]
ChIP-chip: Histone Modifications in embryo 0-12hr [?] [showing 4/4 subtracks]	ChIP-chip: Histone Modifications in embryo 8-12hr [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in L3 (H4, Karpen) [?] [showing 2/2 subtracks]
ChIP-chip: Histone Modifications in embryo 0-4hr [?] [showing 9/9 subtracks]	ChIP-chip: Histone Modifications in Kc167 cells [?]	ChIP-chip: Histone Modifications in Pupae [?] [showing 5/5 subtracks]
ChIP-chip: Histone Modifications in embryo 12-16hr [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in L1 [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in S2-DRSC cells [?]
ChIP-chip: Histone Modifications in embryo 16-20hr [?] [showing 6/6 subtracks]	ChIP-chip: Histone Modifications in L2 [?] [showing 6/6 subtracks]

Histone Modifying Enzymes in Kc167 cells [?] [showing 10/10 subtracks]	Histone Modifying Enzymes in Oregon strain [?]
Histone Modifying Enzymes in ML-DmBG3-c2 cells [?] [showing 9/9 subtracks]	Histone Modifying Enzymes in S2-DRSC cells [?] [showing 14/14 subtracks]

Histone Variants in CME W1 cl.8+ cells [?]	Histone Variants in ML-DmBG3-c2 cells [?] [showing 4/4 subtracks]	Histone Variants in S2-DRSC cells [?] [showing 5/5 subtracks]
Histone Variants in Kc167 cells [?] [showing 2/2 subtracks]	Histone Variants in Oregon strain [?] [showing 4/4 subtracks]

CATCH-IT data, Aha labeling [?]	Chromatin NaCl fractions (Histone Variants) [?] [showing 8/8 subtracks]	H3 [?]
CATCH-IT data, Aha labeling timecourse [?]	Chromatin NaCl fractions (Kc167 cells) [?] [showing 4/4 subtracks]	H33 [?]
CATCH-IT data, pulse/chase Aha labeling [?]	Chromatin NaCl fractions (S2-DRSC cells) [?] [showing 5/5 subtracks]	Histone Variants [?]
Chromatin NaCl fractions (embryonic samples) [?] [showing 6/6 subtracks]	Chromatin NaCl fractions (wing disc) [?] [showing 4/4 subtracks]	Mononucleosomes [?] [showing 3/3 subtracks]

L3 CME W1 Cl.8+ 150mM (control) [?]	L3 Kc167 150mM HP1 RNAi [?]	L3 ML-DmBG3-c2 80mM (control) [?]
L3 CME W1 Cl.8+ 80mM (control) [?]	L3 Kc167 150mM spt6 RNAi [?]
L3 Kc167 150mM (control) [?]	L3 ML-DmBG3-c2 150mM (control) [?]

CGH array scores [?] [showing 4/4 subtracks]	CGH Scores (Tissues) [?] [showing 2/2 subtracks]
CGH array scores (Cell lines) [?]	Copy Number Variation [?] [showing 4/4 subtracks]

ChIP-Seq dORC2 [?] [showing 3/3 subtracks]	ChIP-Seq MCM [?] [showing 2/2 subtracks]
ChIP-Seq dORC2 (Tissues) [?] [showing 5/5 subtracks]	Early origins of replication [?] [showing 3/3 subtracks]

DMG1 gene models [?]	DMG4 gene models [?]
DMG2 gene models [?]	MB8 gene models [?]

DMG1 RTPCR [?]	DMG2 RTPCR target gene models [?]	DMG4 RTPCR [?]
DMG1 RTPCR target gene models [?]	DMG3 RTPCR [?]	DMG4 RTPCR target gene models [?]
DMG2 RTPCR [?]	DMG3 RTPCR target gene models [?]

0-2h embryo	embryo 16-18h	L3 12hr post-molt
Adult Female eclosion+1d	embryo 18-20h	L3 clear gut PS7-9
Adult Female eclosion+30d	embryo 2-4h	L3 dark blue gut PS1-2
Adult Female eclosion+5d	embryo 20-22h	L3 light blue gut PS3-6
Adult Male eclosion+1d	embryo 22-24h	WPP
Adult Male eclosion+30d	embryo 4-6h	WPP+12h
Adult Male eclosion+5d	embryo 6-8h	WPP+24h
embryo 10-12h	embryo 8-10h	WPP+2d
embryo 12-14h	L1	WPP+3d
embryo 14-16h	L2	WPP+4d

Cell Lines [?] [showing 32/32 subtracks]	Embryonic (Total) [?] [showing 12/12 subtracks]	Post-embryonic (Total) [?] [showing 18/18 subtracks]
Embryonic (PolyA) [?] [showing 11/11 subtracks]	Oregon-R Embryonic (polyA) [?] [showing 2/2 subtracks]	Tissues [?] [showing 3/3 subtracks]

CME W1 cl.8+ (C-tailed RNA), Unique mapper [?]	Kc167 (C-tailed RNA), Unique mapper [?]	ML-DmBG3-c2 (polyA RNA), Unique mapper [?]
CME W1 cl.8+ (polyA RNA), Multi mapper [?]	Kc167 (polyA RNA), Multi mapper [?]	S2-DRSC (C-tailed RNA), Unique mapper [?]
CME W1 cl.8+ (polyA RNA), Unique mapper [?]	Kc167 (polyA RNA), Unique mapper [?]	S2-DRSC (polyA RNA), Multi mapper [?]
embryo 16-18h (C-tailed), NexAlign [?]	ML-DmBG3-c2 (C-tailed RNA), Unique mapper [?]	S2-DRSC (polyA RNA), Unique mapper [?]
Kc167 (C-tailed polyA RNA), Multi mapper [?]	ML-DmBG3-c2 (polyA RNA), Multi mapper [?]	Whole Adult Fly, Unique mapper [?]

	MultiMapper	UniqueMapper
1182-4H	1182-4H, Multi mapper [?]	1182-4H, Unique mapper [?]
ML-DmBG1-c1	ML-DmBG1-c1, Multi mapper [?]	ML-DmBG1-c1, Unique mapper [?]
BG2c2	ML-DmBG2-c2, Multi mapper [?]	ML-DmBG2-c2, Unique mapper [?]
CME_L1	=CME_L1_DUMMY	CME_L1, Unique mapper [?]
CME_W2	CME W2, Multi mapper [?]	CME W2, Unique mapper [?]
GM2	GM2, Multi mapper [?]	GM2, Unique mapper [?]
Kc167	Kc167, Multi mapper [?]	Kc167, Unique mapper [?]
MBN2	MBN2, Multi mapper [?]	MBN2, Unique mapper [?]
ML-DmD11	ML-DmD11, Multi mapper [?]	ML-DmD11, Unique mapper [?]
ML-DmD16-c3	ML-DmD16-3, Multi mapper [?]	ML-DmD16-c3, Unique mapper [?]
ML-DmD17-c3	ML-DmD17-c3, Multi mapper [?]	ML-DmD17-c3, Unique mapper [?]
ML-DMD20-c5	ML-DmD20-c5, Multi mapper [?]	ML-DmD20-c5, Unique mapper [?]
ML-DmD21	ML-DmD2, Multi mapper [?]	ML-DmD21, Unique mapper [?]
ML-DmD32	ML-DmD32, Multi mapper [?]	ML-DmD32, Unique mapper [?]
ML-DmD4-c1	ML-DmD4-c1, Multi mapper [?]	ML-DmD4-c1, Unique mapper [?]
ML-DmD8	ML-DmD8, Multi mapper [?]	ML-DmD8, Unique mapper [?]
ML-DmD9	ML-DmD9, Multi mapper [?]	ML-DmD9, Unique mapper [?]
S1	S1, Multi mapper [?]	S1, Unique mapper [?]
S2Rplus	S2R+, Multi mapper [?]	S2R+, Unique mapper [?]
S3	S3, Multi mapper [?]	S3, Unique mapper [?]
Sg4	=Sg4_DUMMY	Sg4, Unique mapper [?]

AdultFemale [?]	Embryo 16-20h [?]	L1 [?]
AdultMale [?]	Embryo 20-24h [?]	L2 [?]
Embryo 0-4h [?]	Embryo 4-8h [?]	L3 RNA-seq [?]
Embryo 12-16h [?]	Embryo 8-12h [?]	Pupae RNA-seq [?]

	MultiMapper	UniqueMapper
embryo_0-2hr	Embryo 0-2h RNA-Seq Multi mapper [?]	Embryo 0-2h RNA-Seq Unique mapper [?]
embryo_2-4hr	Embryo 2-4h RNA-Seq Multi mapper [?]	Embryo 2-4h RNA-Seq Unique mapper [?]
embryo_4-6hr	Embryo 4-6h RNA-Seq Multi mapper	Embryo 4-6h RNA-Seq Unique mapper [?]
embryo_6-8hr	Embryo 6-8h RNA-Seq Multi mapper [?]	Embryo 6-8h RNA-Seq Unique mapper [?]
embryo_8-10hr	Embryo 8-10h RNA-Seq Multi mapper [?]	Embryo 8-10h RNA-Seq Unique mapper [?]
embryo_10-12hr	Embryo 10-12h RNA-Seq Multi mapper [?]	Embryo 10-12h RNA-Seq Unique mapper [?]
embryo_12-14hr	Embryo 12-14h RNA-Seq Multi mapper [?]	Embryo 12-14h RNA-Seq Unique mapper [?]
embryo_14-16hr	Embryo 14-16h RNA-Seq Multi mapper [?]	Embryo 14-16h RNA-Seq Unique mapper [?]
embryo_16-18hr	Embryo 16-18h RNA-Seq Multi mapper [?]	Embryo 16-18h RNA-Seq Unique mapper [?]
embryo_18-20hr	Embryo 18-20h RNA-Seq Multi mapper [?]	Embryo 18-20h RNA-Seq Unique mapper [?]
embryo_20-22hr	Embryo 20-22h RNA-Seq Multi mapper [?]	Embryo 20-22h RNA-Seq Unique mapper [?]
embryo_22-24hr	Embryo 22-24h RNA-Seq Multi mapper [?]	Embryo 22-24h RNA-Seq Unique mapper [?]
L1	L1 RNA-Seq Multi mapper [?]	L1 RNA-Seq Unique mapper [?]
L2	L2 RNA-Seq Multi mapper [?]	L2 RNA-Seq Unique mapper [?]
L3+12hr	L3 + 12hr RNA-Seq Multi mapper [?]	L3+12hr RNA-Seq Unique mapper [?]
L3_PS1-2	L3 PS1-2 RNA-Seq Multi mapper [?]	L3 PS1-2 RNA-Seq Unique mapper [?]
L3_PS3-6	L3 PS3-6 RNA-Seq Multi mapper [?]	L3 PS3-6 RNA-Seq Unique mapper [?]
L3_PS7-9	L3 PS7-9 RNA-Seq Multi mapper [?]	L3 PS7-9 RNA-Seq Unique mapper [?]
WPP	WPP RNA-Seq Multi mapper [?]	White Pre-pupae RNA-Seq Unique mapper [?]
WPP+12hr	WPP + 12hr RNA-Seq Multi mapper [?]	White Pre-pupae 12hr RNA-Seq Unique mapper [?]
WPP+24hr	WPP + 24hr RNA-Seq Multi mapper [?]	White Pre-pupae 24hr RNA-Seq Unique mapper [?]
WPP+2d	WPP + 2days RNA-Seq Multi mapper [?]	White Pre-pupae 2days RNA-Seq Unique mapper [?]
WPP+3d	WPP + 3days RNA-Seq Multi mapper [?]	White Pre-pupae 3days RNA-Seq Unique mapper [?]
WPP+4d	WPP + 4days RNA-Seq Multi mapper [?]	White Pre-pupae 4days RNA-Seq Unique mapper
Adult_Female+1d	Female Eclosion + 1 day RNA-Seq Multi mapper [?]	Adult Female Eclosion 1 day RNA-Seq Unique mapper [?]
Adult_Female+5d	Female Eclosion + 5 days RNA-Seq Multi mapper [?]	Adult Female Eclosion 5 day RNA-Seq Unique mapper [?]
Adult_Female+30d	Female Eclosion + 30 days RNA-Seq Multi mapper [?]	Adult Female Eclosion 30 day RNA-Seq Unique mapper [?]
Adult_Male+1d	Male Eclosion + 1 days RNA-Seq Multi mapper [?]	Adult Male Eclosion 1 day RNA-Seq Unique mapper [?]
Adult_Male+5d	Male Eclosion + 5 days RNA-Seq Multi mapper [?]	Adult Male Eclosion 5 day RNA-Seq Unique mapper [?]
Adult_Male+30d