		C. elegans Genome Browser

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C. elegans Genomic Browser: 37 kbp from I:143,000..180,000

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Curated WormBase WS220 Genes

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Transcription Factors ChIP-Seq (Showing 10 of 10 subtracks)

Transcription Factors ChIP-Seq

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early embryo

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Young Adult 25dC 46hrs

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Tracks

Annotations for Curated and Predicted Genes from WormBase

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Curated WormBase WS220 Genes [?]

Non-coding RNAs [?]

Chromatin Structure

Chromatin Modifying Enzymes

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Centromere Specificaton ChIP-chip arrays [?] [showing 3/3 subtracks]

Chromatin Silencing ChIP-chip arrays [?] [showing 2/2 subtracks]

Chromosome-Nuclear Envelope Interaction [?] [showing 6/6 subtracks]

Histone Modifications and Variants

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Core Histones ChIP-chip arrays [?] [showing 7/7 subtracks]	Histone Modifications (H3K36) ChIP-Seq [?]	Histone Modifications (H3K9) ChIP-chip arrays [?] [showing 11/11 subtracks]
Core Histones ChIP-Seq [?]	Histone Modifications (H3K4) ChIP-chip arrays [?] [showing 14/14 subtracks]	Histone Modifications (H4) ChIP-chip arrays [?] [showing 9/9 subtracks]
Histone Modifications (H3K27) ChIP-chip arrays [?] [showing 9/9 subtracks]	Histone Modifications (H3K4) ChIP-Seq [?]	Histone Modifications (H4) ChIP-Seq [?]
Histone Modifications (H3K36) ChIP-chip arrays [?] [showing 16/16 subtracks]	Histone Modifications (H3K79) ChIP-chip arrays [?] [showing 9/9 subtracks]	Histone Variants ChIP-chip arrays [?]

Nucleosome Structure

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Chromatin fractions extracted with NaCl [?] [showing 3/3 subtracks]	Mononucleosomes [?] [showing 3/3 subtracks]
H3.3 Chromatin fractions extracted with NaCl [?] [showing 3/3 subtracks]	Mononucleosomes 80mM NaCl [?] [showing 2/2 subtracks]

Gene Structure

Single Exon Genes

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Mass-spec MRM [?]

3-ends and UTRS

3RACE polyA-capture 3-UTR 454 alignments

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Adult Hermaphrodite 454 alignments [?]	daf-7 Dauer 454 alignments [?]	L2 454 alignments [?]
Adult Male 454 alignments [?]	daf-9 Dauer 454 alignments [?]	L3 454 alignments [?]
daf-11 Dauer 454 alignments [?]	Embryo 454 alignments [?]	L4 454 alignments [?]
daf-2 Dauer 454 alignments [?]	L1 454 alignments [?]

3RACE polyA-capture 3-UTR 454 sequencing pilot (alignments)

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Adult Hermaphrodite seq.pilot [?]	L1 seq.pilot [?]	L3 seq.pilot [?]
Embryo seq.pilot [?]	L2 seq.pilot [?]	L4 seq.pilot [?]

3UTR Annotation

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3prime UTRs - CEUP1 [?]	USTs - CEUP1 [?]	UTRome polyA sites [?]
polyA sites - CEUP1 [?]	UTRome 3prime UTRs [?]
RSTs - CEUP1 [?]	UTRome polyA signal sequence [?]

Mixed-stage 3RACE 3-UTR 454 sequencing (alignments)

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large RACE products -pool A [?]	large RACE products -pool H [?]	small RACE products -pool G [?]
large RACE products -pool B [?]	small RACE products -pool A [?]	small RACE products -pool H [?]
large RACE products -pool C [?]	small RACE products -pool B [?]	small RACE products -pool V1 [?]
large RACE products -pool D [?]	small RACE products -pool C [?]	Utrome minipool 1 [?]
large RACE products -pool E [?]	small RACE products -pool D [?]	Utrome minipool 2 [?]
large RACE products -pool F [?]	small RACE products -pool E [?]
large RACE products -pool G [?]	small RACE products -pool F [?]

Mixed-stage 3RACE 3-UTR Illumina sequencing (alignments)

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pool A [?]	pool D [?]	pool G [?]
pool C [?]	pool F [?]	pool H [?]

MiRNAs 454 sequencing (alignments)

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eri-1 (mg366) [?]	glp-4 (bn2) [?]	N2 whole worms [?]
fer-1 unfertilized oocytes [?]	him-8 [?]

MiRNAs Illumina sequencing (alignments)

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eri-1 (mg366) [?]	glp-4 (bn2) [?]	N2 embryos [?]
fer-1 unfertilized oocytes	him-8 [?]	N2 mixed stages [?]

Gene Models

Exons

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non-redundant exons from 14 stages [?]

non-redundant exons from 19 stages [?]

Integrated Transcripts

Developmental Timecourse

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Adult spe-9 (colored by exon)	embryo him-8 (colored by mRNA)	mid-L3 (colored by exon)
Adult spe-9 (colored by mRNA)	late embryo (colored by exon)	mid-L3 (colored by mRNA)
dauer daf-2 25dC 91hrs (colored by exon)	late embryo (colored my mRNA)	mid-L4 (colored by exon)
dauer daf-2 25dC 91hrs (colored by mRNA)	male mid-L4 dpy28 him-8 25dC 30hrs (colored by exon)	mid-L4 (colored by mRNA)
dauer entry daf-2 25dC 48hrs (colored by exon)	male mid-L4 dpy28 him-8 25dC 30hrs (colored by mRNA)	RNAseq Aggregate fourteen stages (colored by exon)
dauer entry daf-2 25dC 48hrs (colored by mRNA)	mid-L1 (colored by exon)	RNAseq Aggregate fourteen stages (colored by mRNA)
dauer exit daf-2 25dC 91hrs 15dC 12hrs (colored by exon)	mid-L1 (colored by mRNA)	RNAseq Aggregate nineteen stages (colored by exon)
dauer exit daf-2 25dC 91hrs 15dC 12hrs (colored by mRNA)	mid-L1 lin-35 (colored by exon)	RNAseq Aggregate nineteen stages (colored by mRNA)
early embryo (colored by exon)	mid-L1 lin-35 (colored by mRNA)	Young Adult (colored by exon)
early embryo (colored by mRNA)	mid-L2 (colored by exon)	Young Adult (colored by mRNA)
embryo him-8 (colored by exon)	mid-L2 (colored by mRNA)

Introns

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Adult spe-9 confirmed introns [?]	late embryo confirmed introns [?]	mid-L4 confirmed introns [?]
dauer daf-2 25dC 91hrs confirmed introns [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed introns [?]	RNAseq Aggregate fourteen stages confirmed introns [?]
dauer entry daf-2 25dC 48hrs confirmed introns [?]	mid-L1 confirmed introns [?]	RNAseq Aggregate nineteen stages confirmed introns [?]
dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed introns [?]	mid-L1 lin-35 confirmed introns [?]	Young Adult confirmed introns [?]
early embryo confirmed introns [?]	mid-L2 confirmed introns [?]
embryo him-8 confirmed introns [?]	mid-L3 confirmed introns [?]

PolyA

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Adult spe-9 confirmed polyA [?]	late embryo confirmed polyA [?]	mid-L4 confirmed polyA [?]
dauer daf-2 25dC 91hrs confirmed polyA [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed polyA [?]	RNAseq Aggregate fourteen stages confirmed polyA [?]
dauer entry daf-2 25dC 48hrs confirmed polyA [?]	mid-L1 confirmed polyA [?]	RNAseq Aggregate nineteen stages confirmed polyA [?]
dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed polyA [?]	mid-L1 lin-35 confirmed polyA [?]	Young Adult confirmed polyA [?]
early embryo confirmed polyA [?]	mid-L2 confirmed polyA [?]
embryo him-8 confirmed polyA [?]	mid-L3 confirmed polyA [?]

Splice Leaders

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Adult spe-9 confirmed SLs [?]	late embryo confirmed SLs [?]	mid-L4 confirmed SLs [?]
dauer daf-2 25dC 91hrs confirmed SLs [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed SLs [?]	RNAseq Aggregate fourteen stages confirmed SLs [?]
dauer entry daf-2 25dC 48hrs confirmed SLs [?]	mid-L1 confirmed SLs [?]	RNAseq Aggregate nineteen stages confirmed SLs [?]
dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed SLs [?]	mid-L1 lin-35 confirmed SLs [?]	Young Adult confirmed SLs [?]
early embryo confirmed SLs [?]	mid-L2 confirmed SLs [?]
embryo him-8 confirmed SLs [?]	mid-L3 confirmed SLs [?]

Introns

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Green Lab confirmed introns (all) [?] [showing 6/6 subtracks]	Green Lab confirmed introns 2009-09-21 Chromosome II [?]	Green Lab ESTs 2008-12-02 set 3 [?]
Green Lab confirmed introns 2008-12-02 set 1 [?]	Green Lab confirmed introns 2010-01-26 set 5 [?]	Green Lab ESTs 2008-12-02 set 4 [?]
Green Lab confirmed introns 2008-12-02 set 2 [?]	Green Lab ESTs (all) [?] [showing 7/7 subtracks]	Green Lab ESTs 2009-09-21 Chromosome II [?]
Green Lab confirmed introns 2008-12-02 set 3 [?]	Green Lab ESTs 2008-12-02 set 1 [?]	Green Lab ESTs 2010-01-26 Chromosome I [?]
Green Lab confirmed introns 2008-12-02 set 4 [?]	Green Lab ESTs 2008-12-02 set 2 [?]

Partial Gene Models (Genelets)

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Adult Harposporium control exp. OP50 2-24hrs (colored by exon)	dauer exit daf-2 25dC 91hrs 15dC 12hrs Genelets (colored by exon)	mid-L1 lin-35 Genelets (colored by exon)
Adult Harposporium control exp. OP50 2-24hrs (colored by mRNA)	dauer exit daf-2 25dC 91hrs 15dC 12hrs Genelets (colored by mRNA)	mid-L1 lin-35 Genelets (colored by mRNA)
Adult Harposporium exp. 2-24hrs (colored by exon)	early embryo Genelets (colored by exon)	mid-L2 Genelets (colored by exon)
Adult Harposporium exp. 2-24hrs (colored by mRNA)	early embryo Genelets (colored by mRNA)	mid-L2 Genelets (colored by mRNA)
Adult S.macescens control exp. OP50 1-24hrs (colored by exon)	embryo him-8 Genelets (colored by exon)	mid-L3 Genelets (colored by exon)
Adult S.macescens control exp. OP50 1-24hrs (colored by mRNA)	embryo him-8 Genelets (colored by mRNA)	mid-L3 Genelets (colored by mRNA)
Adult S.macescens Db10 exp. 1-24hrs (colored by exon)	L4 soma no DNAse I (colored by exon)	mid-L4 Genelets (colored by exon)
Adult S.macescens Db10 exp. 1-24hrs (colored by mRNA)	L4 soma no DNAse I (colored by mRNA)	mid-L4 Genelets (colored by mRNA)
Adult spe-9 Genelets (colored by exon)	late embryo Genelets (colored by exon)	RNAseq Aggregate fourteen stages (colored by exon)
Adult spe-9 Genelets (colored by mRNA)	late embryo Genelets (colored my mRNA)	RNAseq Aggregate fourteen stages (colored by RNA)
dauer daf-2 25dC 91hrs Genelets (colored by exon)	male mid-L4 dpy28 him-8 25dC 30hrs Genelets (colored by exon)	Young Adult Genelets (colored by exon)
dauer daf-2 25dC 91hrs Genelets (colored by mRNA)	male mid-L4 dpy28 him-8 25dC 30hrs Genelets (colored by mRNA)	Young Adult Genelets (colored by mRNA)
dauer entry daf-2 25dC 48hrs Genelets (colored by exon)	mid-L1 Genelets (colored by exon)
dauer entry daf-2 25dC 48hrs Genelets (colored by mRNA)	mid-L1 Genelets (colored by mRNA)

Introns

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Adult Harposporium control exp. OP50 2-24hrs confirmed introns [?]	dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed introns [?]	mid-L1 lin-35 confirmed introns [?]
Adult Harposporium exp. 2-24hrs confirmed introns [?]	early embryo confirmed introns [?]	mid-L2 confirmed introns [?]
Adult S.macescens control exp. OP50 1-24hrs confirmed introns [?]	embryo him-8 confirmed introns [?]	mid-L3 confirmed introns [?]
Adult S.macescens Db10 exp. 1-24hrs confirmed introns [?]	L4 soma no DNAse I confirmed introns [?]	mid-L4 confirmed introns [?]
Adult spe-9 confirmed introns [?]	late embryo confirmed introns [?]	RNAseq Aggregate fourteen stages confirmed introns [?]
dauer daf-2 25dC 91hrs confirmed introns [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed introns [?]	Young Adult confirmed introns [?]
dauer entry daf-2 25dC 48hrs confirmed introns [?]	mid-L1 confirmed introns [?]

PolyA

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Adult Harposporium control exp. OP50 2-24hrs confirmed polyA [?]	dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed polyA [?]	mid-L1 lin-35 confirmed polyA [?]
Adult Harposporium exp. 2-24hrs confirmed polyA [?]	early embryo confirmed polyA [?]	mid-L2 confirmed polyA [?]
Adult S.macescens control exp. OP50 1-24hrs confirmed polyA [?]	embryo him-8 confirmed polyA [?]	mid-L3 confirmed polyA [?]
Adult S.macescens Db10 exp. 1-24hrs confirmed polyA [?]	L4 soma no DNAse I confirmed polyA [?]	mid-L4 confirmed polyA [?]
Adult spe-9 confirmed polyA [?]	late embryo confirmed polyA [?]	RNAseq Aggregate fourteen stages confirmed polyA [?]
dauer daf-2 25dC 91hrs confirmed polyA [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed polyA [?]	Young Adult confirmed polyA [?]
dauer entry daf-2 25dC 48hrs confirmed polyA [?]	mid-L1 confirmed polyA [?]

Splice Leaders

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Adult Harposporium control exp. OP50 2-24hrs confirmed SLs [?]	dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed SLs [?]	mid-L1 lin-35 confirmed SLs [?]
Adult Harposporium exp. 2-24hrs confirmed SLs [?]	early embryo confirmed SLs [?]	mid-L2 confirmed SLs [?]
Adult S.macescens control exp. OP50 1-24hrs confirmed SLs [?]	embryo him-8 confirmed SLs [?]	mid-L3 confirmed SLs [?]
Adult S.macescens Db10 exp. 1-24hrs confirmed SLs [?]	L4 soma no DNAse I confirmed SLs [?]	mid-L4 confirmed SLs [?]
Adult spe-9 confirmed SLs [?]	late embryo confirmed SLs [?]	RNAseq Aggregate fourteen stages confirmed SLs [?]
dauer daf-2 25dC 91hrs confirmed SLs [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed SLs [?]	Young Adult confirmed SLs [?]
dauer entry daf-2 25dC 48hrs confirmed SLs [?]	mid-L1 confirmed SLs [?]

Splice Leaders

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Green Lab confirmed SL acceptor sites Set 1 [?]

Green Lab ESTs SL Set 1 [?]

RNA Expression Profiling

mRNA

polyA mRNA reads, developmental timecourse

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Adult spe-9 [?]	L4 soma no DNAse I [?]	mid-L1 lin-35 cap [?]
dauer daf-2 25dC 91hrs [?]	late embryo 20dC 45hrs [?]	mid-L2 25dC 14 hrs [?]
dauer entry daf-2 25dC 48hrs [?]	late embryo cap6 [?]	mid-L3 25dC 25hrs [?]
dauer exit daf-2 25dC 91hrs 15dC 12hrs [?]	male mid-L4 cap2 [?]	mid-L4 25dC 36hrs [?]
early embryo [?]	male mid-L4 dpy28 him-8 25dC 30hrs [?]	mid-L4 cap4 [?]
early embryo cap5 [?]	mid-L1 20dC 4hrs [?]	mid-L4 RR cap3 [?]
embryo him-8 20dC [?]	mid-L1 lin-35 25dC 40hrs [?]	Young Adult 25dC 46hrs [?]

polyA mRNA reads, developmental timecourse (stranded)

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Adult spe-9 [?]	early embryo 50-300 [?]	early embryo rep2 [?]
daf-2 rep1 [?]	early embryo 50-330 [?]	embryo him-8 rep1 [?]
daf-2 rep4 [?]	early embryo 50-360 [?]	embryo him-8 rep2 [?]
dauer entry daf-2 rep1 [?]	early embryo 50-390 [?]	L1 replicate 1 [?]
dauer entry daf-2 rep2 [?]	early embryo 50-420 [?]	L1 replicate 2 [?]
dauer entry daf-2 rep3 [?]	early embryo 50-450 [?]	L2 replicate 1 [?]
dauer entry daf-2 rep4 [?]	early embryo 50-480 [?]	L3 replicate 2 [?]
dauer exit daf-2 rep1 [?]	early embryo 50-540 [?]	L4 JK1107 soma replicate 1 [?]
dauer exit daf-2 rep4 [?]	early embryo 50-570 [?]	L4 JK1107 soma replicate 2 [?]
early embryo 50-0 [?]	early embryo 50-60 [?]	L4 male replicate 1 [?]
early embryo 50-0 (initial reads) [?]	early embryo 50-60 (initial reads) [?]	L4 male replicate 2 [?]
early embryo 50-120 [?]	early embryo 50-600 [?]	L4 replicate 2 [?]
early embryo 50-120 (initial reads) [?]	early embryo 50-630 [?]	late embryo rep1 [?]
early embryo 50-150 [?]	early embryo 50-660 [?]	late embryo rep2 [?]
early embryo 50-180 [?]	early embryo 50-690 [?]	mid-L1 lin-35 25dC 40hr [?]
early embryo 50-240 [?]	early embryo 50-720 [?]	Yong Adult rep1 [?]
early embryo 50-270 [?]	early embryo 50-90 [?]	Yong Adult rep2 [?]
early embryo 50-30 [?]	early embryo 50-90 (initial reads) [?]	Yong Adult rRNA depleted [?]
early embryo 50-30 (initial reads) [?]	early embryo rep1 [?]

polyA mRNA reads, pathogen exposure

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Adult D.coniospora control OP50 exp. 2-12hrs [?]	Adult E.faecalis exp. 1-24hrs [?]	Adult P.luminescens exp. 2-24hrs [?]
Adult D.coniospora exp 1-5hr [?]	Adult Harposporium control exp. OP50 2-24hrs [?]	Adult S.macescens Db10 control exp. OP50 1-24hr [?]
Adult D.coniospora exp. 2-12hr [?]	Adult Harposporium exp. 2-24hrs [?]	Adult S.macescens Db10 exp. 1-24hr [?]

polyA mRNA reads, pathogen exposure (stranded)

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Adult D.coniospora OP50 control [?]	Adult fer-15 H.sphaerosporum exp [?]	Adult P.luminescens 24hr exp [?]
Adult E.faecalis 24hr exp [?]	Adult fer-15 H.sphaerosporum OP50 control [?]	Adult S.macescens Db10 [?]
Adult fer-15 D.coniospora 12hr exp [?]	Adult fer-15 Harposporium exp [?]	Adult S.macescens Db10 OP50 control [?]
Adult fer-15 D.coniospora 5hr exp [?]	Adult fer-15 Harposporium OP50 control [?]

NimbleGen Array

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mRNA microarray N2 Embryos [?]

mRNA microarray N2 Mixed Embryos [?]

Tiling Array

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Development Stages [?] [showing 11/11 subtracks]

Pathogen Exposure [?] [showing 6/6 subtracks]

Tiling Array, FACS-sorted cells

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Embryo FACS-sorted cells [?] [showing 18/18 subtracks]

Post-Embryo FACS-sorted cells [?] [showing 18/18 subtracks]

ncRNA

RNA-Seq

miRNA, developmental timecourse

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Adult spe-9 Day 0 miRNA expression change [?]	Embryo miRNA expression change [?]	mid-L4 miRNA expression change [?]
Adult spe-9 Day 12 miRNA expression change [?]	mid-L1 Embryo miRNA expression change [?]	Young Adult male dpy-5;him-8 miRNA expression change [?]
Adult spe-9 Day 5 miRNA expression change [?]	mid-L2 miRNA expression change [?]	Young Adult miRNA expression change [?]
Adult spe-9 Day 8 miRNA expression change [?]	mid-L3 miRNA expression change [?]

small RNA, developmental timecourse

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Adult spe-9 Day 0 [?]	embryo N2 hermaphrodite [?]	L4 N2 hermaphrodite [?]
Adult spe-9 Day 5 [?]	L1 N2 hermaphrodite [?]	Young Adult dpy-28 him-8 male [?]
Adult spe-9 Day 8 [?]	L2 N2 hermaphrodite [?]	Young Adult N2 hermaphrodite [?]
Adult spe-9 Day 8 [?]	L3 N2 hermaphrodite [?]

Transcription Factors

Control N2 ChIP

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Pol II Combined (N2 ChIP) [?] [showing 7/7 subtracks]

GFP ChIP

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ALR-1 Combined (GFP ChIP) [?]	EGL-5 Combined (GFP ChIP) [?]	MEP-1 Combined (GFP ChIP) [?]
ALY-2 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	ELT-3 Combined (GFP ChIP) [?]	NHR-11 Combined (GFP ChIP) [?]
AMA-1 Combined (GFP ChIP) [?]	EOR-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	NHR-28 Combined (GFP ChIP) [?] [showing 2/2 subtracks]
BLMP-1 Combined (GFP ChIP) [?]	F16B12.6 Combined (GFP ChIP) [?]	NHR-6.v2 Combined (GFP ChIP) [?]
C01B12.2 Combined (GFP ChIP) [?]	F45C12.2 Combined (GFP ChIP) [?]	PES-1 Combined (GFP ChIP) [?]
CEH-14 Combined (GFP ChIP) [?]	FOS-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	PHA-4 Combined (GFP ChIP) [?] [showing 6/6 subtracks]
CEH-26 Combined (GFP ChIP) [?]	GEI-11 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	PQM-1 Combined (GFP ChIP) [?]
CEH-30 Combined (GFP ChIP) [?]	HLH-1 Combined (GFP ChIP) [?]	R02D3.7 Combined (GFP ChIP) [?]
CES-1 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	LIN-11 Combined (GFP ChIP) [?]	SEA-2 Combined (GFP ChIP) [?]
DAF-12 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	LIN-13 Combined (GFP ChIP) [?]	SKN-1 Combined (GFP ChIP) [?]
DAF-16 Combined (GFP ChIP) [?]	LIN-15B Combined (GFP ChIP) [?] [showing 2/2 subtracks]	UNC-130 Combined (GFP ChIP) [?]
DPL-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	LIN-39 Combined (GFP ChIP) [?]	UNC-62 Combined (GFP ChIP) [?] [showing 3/3 subtracks]
DPY-27 Combined (GFP ChIP) [?]	MAB-5 Combined (GFP ChIP) [?]	W03F9.2 Combined (GFP ChIP) [?]
EFL-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	MDL-1 Combined (GFP ChIP) [?]	ZAG-1 Combined (GFP ChIP) [?] [showing 3/3 subtracks]
EGL-27 Combined (GFP ChIP) [?]	MEF-2 Combined (GFP ChIP) [?]

GFP ChIP (Peak Recall)

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ALR-1 Combined (GFP ChIP) recalled peaks [?]	GEI-11 Combined (GFP ChIP) recalled peaks [?]	MDL-1 Combined (GFP ChIP) recalled peaks [?]
CEH-14 Combined (GFP ChIP) recalled peaks [?]	HLH-1 Combined (GFP ChIP) recalled peaks [?]	MEP-1 Combined (GFP ChIP) recalled peaks [?]
CEH-30 Combined (GFP ChIP) recalled peaks [?]	LIN-11 Combined (GFP ChIP) recalled peaks [?]	PES-1 Combined (GFP ChIP) recalled peaks [?]
DPY-27 Combined (GFP ChIP) recalled peaks [?]	LIN-13 Combined (GFP ChIP) recalled peaks [?]	PHA-4 Combined (GFP ChIP) recalled peaks [?] [showing 6/6 subtracks]
EGL-27 Combined (GFP ChIP) recalled peaks [?]	LIN-15B Combined (GFP ChIP) recalled peaks [?]	PQM-1 Combined (GFP ChIP) recalled peaks [?]
EGL-5 Combined (GFP ChIP) recalled peaks [?]	LIN-39 Combined (GFP ChIP) recalled peaks [?]	SKN-1 Combined (GFP ChIP) recalled peaks [?]
EOR-1 Combined (GFP ChIP) recalled peaks [?]	MAB-5 Combined (GFP ChIP) recalled peaks [?]	UNC-130 Combined (GFP ChIP) recalled peaks [?]

HOT

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High Occupancy Target regions [?]

PolII ChIP

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AMA-1 Combined (Pol II ChIP) [?]	EOR-1 Combined (Pol II ChIP) [?]	PHA-4 Combined (Pol II ChIP) [?] [showing 3/3 subtracks]
DAF-16 Combined (Pol II ChIP) [?]	HLH-8 Combined (Pol II ChIP) [?]
EGL-5 Combined (Pol II ChIP) [?]	MAB-5 Combined (Pol II ChIP) [?]

PolII Isoforms ChIP

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Polymerase II Isoforms ChIP-chip arrays [?] [showing 7/7 subtracks]

Transcription and Chromatin

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CBP-1 ChIP-chip arrays [?]	MES-4 ChIP-chip arrays [?] [showing 3/3 subtracks]	Transcription Factors ChIP-Seq [?] [showing 10/10 subtracks]
Dosage Compensation ChIP-chip arrays [?] [showing 17/17 subtracks]	MRG-1 ChIP-chip arrays [?]	ZFP-1 ChIP-chip arrays [?] [showing 3/3 subtracks]
Dosage Compensation ChIP-Seq [?]	No Antibody (IGG) ChIP-chip arrays [?] [showing 2/2 subtracks]
Lin-15B ChIP-chip arrays [?]	Polycomb Proteins ChIP-Seq [?]

non-modENCODE Reference Data

mRNAs from WormBase

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ESTs (all) [?]	Mixed-stage tiling arrays [?]	ORFeome sequence tags [?]
ESTs (spliced) [?]	N2 tiling arrays [?]	smg-1 tiling arrays [?]

Chromatin Structure Information from WormBase

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DNAse I Hypersensitivity sites [?]

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nGASP: AUGUSTUS [?]	nGASP: JIGSAW combined genes [?]
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Analysis

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upload_81997

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ConfigurationWed Dec 31 19:00:00 19690 bytes

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TRANSPOSONS.gff3.txt

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TRANSPOSONS.gff3.txtThu Apr 26 18:25:29 20122106622 bytes
ConfigurationThu Apr 26 18:25:31 20121166 bytes

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